Fix DeprecationWarning introduced by Qiskit 1.3

[jyu00]

What is the expected feature or enhancement?

Qiskit 1.3 deprecated the Pulse package, causing a bunch of deprecation warnings to be raised when the transpiler passes in this package are used. For example:

/Users/davidmckay/miniforge3/envs/qiskit_latest/lib/python3.10/site-packages/qiskit_ibm_runtime/transpiler/passes/scheduling/block_base_padder.py:265: DeprecationWarning: The property ``qiskit.circuit.instruction.Instruction.condition_bits`` is deprecated as of qiskit 1.3.0. It will be removed in 2.0.0.
  if node.op.condition_bits or isinstance(node.op, ControlFlowOp):
/Users/davidmckay/miniforge3/envs/qiskit_latest/lib/python3.10/site-packages/qiskit_ibm_runtime/transpiler/passes/scheduling/block_base_padder.py:272: DeprecationWarning: The method ``qiskit.dagcircuit.dagcircuit.DAGCircuit.has_calibration_for`` is deprecated as of qiskit 1.3.0. It will be removed in Qiskit 2.0.0. The entire Qiskit Pulse package is being deprecated and this is a dependency on the package.
  if self._block_dag.has_calibration_for(node):
/Users/davidmckay/miniforge3/envs/qiskit_latest/lib/python3.10/site-packages/qiskit_ibm_runtime/transpiler/passes/scheduling/block_base_padder.py:540: DeprecationWarning: The property ``qiskit.circuit.instruction.Instruction.condition_bits`` is deprecated as of qiskit 1.3.0. It will be removed in 2.0.0.
  self._conditional_block = bool(node.op.condition_bits)

Acceptance criteria

No Qiskit deprecation warnings are issued when using functions in this package.

[kt474]

Is this a duplicate with #2069?

[jyu00]

Is pulse the only deprecation warning we get from Qiskit 1.3?

[1ucian0]

mostly. Like test.unit.test_data_serialization.TestDataSerialization triggers PendingDeprecationWarnings:

2025-01-08T05:06:32.7612061Z test_coder_qc (test.unit.test_data_serialization.TestDataSerialization)
2025-01-08T05:06:32.7619612Z Test runtime encoder and decoder for circuits. ... /home/runner/work/qiskit-ibm-runtime/qiskit-ibm-runtime/test/unit/test_data_serialization.py:110: PendingDeprecationWarning: The class ``qiskit.circuit.library.n_local.efficient_su2.EfficientSU2`` is pending deprecation as of Qiskit 1.3. It will be marked deprecated in a future release, and then removed no earlier than 3 months after the release date. Use the function qiskit.circuit.library.efficient_su2 instead.
2025-01-08T05:06:32.7622547Z   unbound = EfficientSU2(num_qubits=4, reps=1, entanglement="linear")
2025-01-08T05:06:32.7625082Z /opt/hostedtoolcache/Python/3.9.20/x64/lib/python3.9/site-packages/qiskit/circuit/library/n_local/efficient_su2.py:258: PendingDeprecationWarning: The class ``qiskit.circuit.library.n_local.two_local.TwoLocal`` is pending deprecation as of Qiskit 1.3. It will be marked deprecated in a future release, and then removed no earlier than 3 months after the release date. Use the function qiskit.circuit.library.n_local instead.
2025-01-08T05:06:32.7627503Z   super().__init__(
2025-01-08T05:06:32.7629718Z /opt/hostedtoolcache/Python/3.9.20/x64/lib/python3.9/site-packages/qiskit/circuit/library/n_local/two_local.py:216: PendingDeprecationWarning: The class ``qiskit.circuit.library.n_local.n_local.NLocal`` is pending deprecation as of Qiskit 1.3. It will be marked deprecated in a future release, and then removed no earlier than 3 months after the release date. Use the function qiskit.circuit.library.n_local instead.
2025-01-08T05:06:32.7631832Z   super().__init__(

[jyu00]

The Qiskit PR that deprecated pulse restructured their DD passes to avoid using pulse modules. Presumably we can do something similar.

[kt474]

There are also non DD related uses of the pulse module in our codebase:

• fake_backend.py: AcquireChannel, DriveChannel, MeasureChannel, ControlChannel - used to set the channels map of a fake backend configuration.
• backend_configuration.py: AcquireChannel, Channel, ControlChannel, DriveChannel,MeasureChannel
• ibm_backend.py: AcquireChannel, ControlChannel, DriveChannel,MeasureChannel
• pulse_defaults.py: This file was copied over from Qiskit because of the V1 backend removal. Imports InstructionScheduleMap and PulseQobjDef.

Are we expected to wait until these are all copied to qiskit dynamics? Or copy them into this repo?