GSClassifier: Gene Signature Classifier

A comprehensive and expandable classification tool based on pure transcriptomics for precision medicine

🐫 Tutorial

Github wiki of GSClassifier would be still online but not maintained anymore.

Please go to eBook for step-by-step guides.

👽 Authors

Weibin Huang (黄伟斌); [email protected]; Blog;

Current position:

• Department of Gastrointestinal Surgery, Zhujiang Hospital, Southern Medical University, 253 Industrial Avenue Central, Guangzhou, Guangdong, China

Legacy position:

• Department of Gastrointestinal Surgery, The First Affiliated Hospital of Sun Yat-sen University, 58 Zhongshan 2nd Road, Guangzhou 510080, Guangdong, China.

• Guangdong Provincial Key Laboratory of Digestive Cancer Research, The Seventh Affiliated Hospital of Sun Yat-sen University, No. 628 Zhenyuan Road, Shenzhen, 518107, Guangdong, China.

👍 Our papers

1. https://doi.org/10.1093/bib/bbac554

@article{weibin2023,
   author = {Huang, W. and Zhang, Y. and Chen, S. and Yin, H. and Liu, G. and Zhang, H. and Xu, J. and Yu, J. and Xia, Y. and He, Y. and Zhang, C.},
   title = {Personalized immune subtypes based on machine learning predict response to checkpoint blockade in gastric cancer},
   journal = {Brief Bioinform},
   volume = {24},
   number = {1},
   ISSN = {1477-4054 (Electronic)
1467-5463 (Linking)},
   DOI = {10.1093/bib/bbac554},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/36572651},
   year = {2023},
   type = {Journal Article}
}

💿 License

GSClassifier is released under the GPL-3.0 + license. See LICENSE for details.

⭐ Reference

1. Thorsson V, Gibbs D L, Brown S D, et al. The Immune Landscape of Cancer[J]. Immunity, 2018, 48(4): 812-830 e814. DOI: 10.1016/j.immuni.2018.03.023

2. Gibbs D L J B. Robust classification of Immune Subtypes in Cancer[J]. bioRxiv. 2020. DOI: 10.1101/2020.01.17.910950